GitHub Sensor User Guide
The GitHub Sensor User Guide provides instructions for deploying and operating the GitHub Sensor within the Keyfactor AgileSec Platform. This guide covers supported authentication methods, execution methods, configuration options, and troubleshooting.
Refer to Sensors Architecture and Overview for additional details on sensor architecture, data flows, incremental scanning, and auto-resolution.
Overview
The GitHub Sensor integrates GitHub (GitHub Cloud or GitHub Enterprise) with Keyfactor's AgileSec Platform. This sensor allows you to discover, inventory, and analyze cryptographic assets across multiple repositories within a GitHub organization.
Key Features
Organization-Wide Scanning: Scan all repositories in a GitHub organization in a single execution.
Flexible Filtering: Use glob patterns to include or exclude specific repositories.
Deep Cryptographic Discovery: Automatically identifies certificates, private keys, keystores, and cryptographic libraries embedded in source code.
Incremental Scanning: Efficiently scans only new or modified files in subsequent runs.
What Gets Scanned
The sensor downloads repository archives from GitHub and analyzes all files to discover:
X.509 Certificates: SSL/TLS certificates, code signing certificates, client authentication certificates
Private Keys: RSA, DSA, EC private keys in PEM, DER, and PKCS8 formats
Java Keystores: JKS, JCEKS, PKCS12 keystores
Tokens: JWT and JWE tokens
Cryptographic Libraries: OpenSSL, BouncyCastle, http://cryptography.io , and other crypto implementations
Code Artifacts: Embedded certificates in compiled code (JAR, WAR, EAR files)
Prerequisites
GitHub Requirements
Requirement | Details |
|---|---|
Protocol | HTTPS required for API access. |
Access | Network connectivity from the sensor machine to the GitHub server. |
API Access | GitHub REST API must be accessible. |
Remote Execution Requirements
If running the unified sensor remotely using CLI:
Component | Requirement |
|---|---|
Operating System |
|
RAM | 3 GB minimum, 4 GB recommended for large repositories |
Disk Space | Minimum 2x Size of your repository. |
Permissions | Read/Write access to working directory |
Supported Authentication Methods
GitHub Sensor supports token-based authentication.
Step 1: Generate a Fine-Grained Personal Access Token
Log in to GitHub.
Go to Settings → Developer settings → Personal access tokens → Fine-grained tokens (or navigate to
https://github.com/settings/personal-access-tokens/new.Click Generate new token.
Configure the token:
Token name: A descriptive name (e.g., "AgileSec Scanner")
Expiration: Set an appropriate expiration
Repository access: Select All repositories (or specific repos if preferred)
Permissions: Under Repository permissions, set:
Contents→ Read-onlyMetadata→ Read-only
Click Generate token.
Copy the token immediately - it will only be shown once.
Store the token securely.
Step 2: Verify Token
Test the token to ensure it works:
# set your token
export GITHUB_TOKEN="your-token-here"
export GITHUB_URL="https://api.github.com" # or your enterprise URL
git clone https://oauth2:<token>@github.com/org/repo.git
Required Access Rights
The GitHub access token must have the following permissions to successfully authenticate:
Permission | Scope | Purpose | Required |
|---|---|---|---|
Contents | Read Only | required for downloading repository | ✅ Yes |
Metadata | Read-only | required for enumerating repositories | ✅ Yes |
Running the Sensor
The GitHub sensor can be executed using the following methods:
Platform Scan Execution: Configure and execute scans directly though the Keyfactor AgileSec web UI with on-demand or scheduled execution options.
Using API: Programmatically trigger scans through REST API calls, enabling integration with CI/CD pipelines and automation workflows.
Remote Scan Execution: Deploy and run the sensor via CLI on customer-managed infrastructure for scenarios such as:
Scanning air-gapped or internal instances the platform cannot directly reach
Customers wanting to manage their own scheduling and execution environment.
Refer to Sensors Architecture and Overview: Running the Sensor for additional execution and flow details.
Platform Scan Execution
Running the sensor through the user interface is the simplest and fastest way to get started. The platform enables running on-demand or scheduled scans in a dedicated environment.
Platform Scan Configuration
Step 1: Navigate to Sensors Setup Page
1.1 Open your browser and navigate to the Keyfactor AgileSec Platform Web URL
1.2 Log in with your credentials
1.3 Click on "Sensors" in the navigation bar.

Step 2: Select GitHub Sensor
2.1 Click the "Choose a Sensor" button.

2.2 Browse or search for "GitHub".
2.3 Click on the GitHub sensor card

This will open the sensor configuration interface.
Step 3: Configure Sensor Parameters
3.1 Fill in the required configuration parameters:

Platform Scan Configuration Fields
Field Name | Display Name | Type | Required | Description |
|---|---|---|---|---|
| GitHub API Base URL | Single-line text | ❌ No | Only specify this field if self-hosting a GitHub Enterprise Server instance. For http://GitHub.com , leave blank (defaults to https://api.github.com ). For self-hosted instances, use your GitHub Enterprise API URL (e.g., https://github.company.com/api/v3 ) |
| Authentication Token | Password field | ❌ No | Required for scanning private repos. Requires |
| Branch | Single-line text | ❌ No | Branch to scan (if not specified, default branch is inferred) |
| Accepted Paths | Multiple values | ✅ Yes | Glob patterns for repositories to include in organization_name/glob format. Examples:
|
| Excluded Paths | Multiple values | ❌ No | Glob patterns for repositories to exclude from the included set. Utilizes the same format as |
| Incremental Scan | Boolean | ✅ Yes | Enable to scan only updates since last run. See Incremental Scanning |
| Auto-Resolution Interval | Number | ✅ Yes | Number of incremental scans to perform before running a full scan. See Incremental Scanning for details. Only used with incremental scan. |
Scan Execution Using API
Scans may be programmatically triggered through REST API calls, enabling seamless integration with CI/CD pipelines, automation workflows, and custom applications. API execution provides flexibility for developers to incorporate cryptographic scanning into their existing development and deployment processes.
Note: For complete API reference, see the API document.
API Access Token
Open your browser and navigate to the AgileSec Platform UI.
Log in with your Keyfactor credentials.
Click "Access Tokens" in the main navigation menu.
Click "Generate Token".
Set Token Type to API Token and provide the required details.
Click "Generate" and copy the generated token.

API Endpoint
POST https://<platform-url>/v3/scan/create
Request Format
Headers
Content-Type: application/json
isg-api-token: <your-api-token>
Request Body
The complete request body contains sensor configuration in the sensorConfig field, i.e:
{
"sensorName": "<sensor name>",
"sensorType": "Github Sensor",
"sensorConfig": {
"url": "<github api url>",
"branch": "<branch name>",
"token": "<personal access token>",
"include_paths": "<include patterns>",
"exclude_paths": "<exclude patterns>"
},
"callbackId": "<callback id>",
"labels": [
{
"<label name>": "<label value>"
}
],
"priority": "<priority>",
"incrementalScan": true,
"autoResolutionInterval": 5
}
API Field Descriptions
See Platform Scan Configuration Fields.
Remote Scan Execution
Remote Execution Flow allows you to run the sensor on a host using the Unified Sensor binary.
Remote Scan Execution Configuration
Step 1: Download Unified Sensor
1.1 Navigate to AgileSec Platform UI → Sensors → Remote Scan.

1.2 Download the sensor binary for your operating system.

Step 2: Generate Remote Sensor Token
2.1 In the Remote Scan UI, click "Generate Token".
2.2 Copy the generated token.
2.3 Store the token securely in an environment variable or set it in the sensor config:
export SENSOR_TOKEN="your-generated-token"
Step 3: Create Configuration File
Create a YAML configuration file (e.g., github-config.yml) with your scan settings. An example configuration can be found in config/sample-configs/github.yml.
Step 4: Run the Sensor
Execute the sensor with your configuration file:
Linux/macOS
BASH# Set environment variables export SENSOR_TOKEN="your-sensor-token" export GITHUB_TOKEN="your-github-token" # Run sensor ./unified_sensor_linux -c github-config.ymlWindows (PowerShell)
POWERSHELL# Set environment variables $env:SENSOR_TOKEN = "your-sensor-token" $env:GITHUB_TOKEN = "your-github-token" # Run sensor .\\unified_sensor_windows.exe -c .\\github-config.yml
Remote Scan Execution Configuration Examples
Scan All Repos in an Org (Public)
YAMLscan_config: plugins: - isg_github - trigger_discover - export config: isg_github: name: github plugin_config: include_paths: - "myorg" # Equivalent to "myorg/**"GitHub Enterprise (With Auth)
YAMLscan_config: plugins: - isg_github - trigger_discover - export config: isg_github: name: github plugin_config: url: "<https://github.mycompany.com>" token: "${env:GITHUB_TOKEN}" include_paths: - "internal-team" exclude_paths: - "internal-team/archived-*"Scan Specific Branch
YAMLscan_config: plugins: - isg_github - trigger_discover - export config: isg_github: name: github plugin_config: url: "<https://github.com>" token: "${env:GITHUB_TOKEN}" branch: "develop" include_paths: - "myorg/myrepo"
Known Limitations
Rate Limiting
Description: GitHub enforces API rate limits.
Impact: Large organizations with many repositories may hit rate limits.
Workaround: Always use a Personal Access Token; usually that has higher limits. Also, for individual repositories you can use the Git Sensor.
Binary Files
Description: While the sensor scans files, opaque binary blobs without recognized headers may not be deeply analyzed.
Troubleshooting
Common Errors
repository not found(404)Cause: The URL is incorrect, OR the credentials provided do not have access to the private repository.
Fix: Check the URL.
authentication failed(401)Cause: Invalid credentials.
Fix: Verify the credentials are correct by testing with a manual
git clonecommand.
unable to access(402/Connection Refused)Cause: Network connectivity issue.
Fix: Ensure the machine running the sensor can reach the GitHub server URL. Check firewalls and proxies.
could not find remote branchCause: The specified branch does not exist on the remote.
Fix: Verify the branch name matches exactly (case-sensitive).
Getting Support
Collect diagnostic information:
Sensor version
Configuration file (redact tokens)
Log output
GitHub details (cloud vs enterprise, URL, version)
Contact Support:
Portal: https://support.keyfactor.com